Directory and file structure

Directory structure

In order to generate and populate plots, the start function requires access to the directory housing subdirectories, which in turn contain JSON files to be visualized.

Here is an example of the directory structure:

.
├── app.py
├── internal
│      ├── experiment1
|      |    └── compass-nd.json
|      |
|      ├── experiment2
|      |    ├── prevent-AD.json
|      |    └── compass-nd.json
|      |
│      └── experiment3
|           └── prevent-AD.json

Data file structure

NeRV processes JSON files that adhere to a specific format.

Info

For a more comprehensive example, please refer to this link.

Below is a portion of the file that follows this specific format as an example of its structure:

{
  "sub-1004359_ses-PREBL00_run-001_T1w.nii.gz": {
    "FSL": {
      "FSL_First": {
        "inputID": 3541682,
        "toolConfigID": 721,
        "taskID": 1874664,
        "status": "Completed",
        "outputID": 3663588,
        "isUsed": true
      },
      "Subfolder_File_Extractor_FSL": {
        "inputID": 3663588,
        "toolConfigID": 2094,
        "taskID": 1874748,
        "status": "Completed",
        "outputID": 3663636,
        "isUsed": true
      },
      "FSL_Stats": {
        "inputID": 3663636,
        "toolConfigID": 1698,
        "taskID": 1874769,
        "status": "Completed",
        "outputID": 3663651,
        "isUsed": true
      },
      "Result": {
        "result": "1715",
        "isUsed": true
      }
    },
    "FreeSurfer": {
      "FreeSurfer_Recon_all": {
        "inputID": 3541682,
        "toolConfigID": 583,
        "taskID": 1874685,
        "status": "Completed",
        "outputID": 3663675,
        "isUsed": true
      },
      "Subfolder_File_Extractor_FreeSurfer_1": {
        "inputID": 3663675,
        "toolConfigID": 2094,
        "taskID": 1874793,
        "status": "Completed",
        "outputID": 3663702,
        "isUsed": true
      },
      "Subfolder_File_Extractor_FreeSurfer_2": {
        "inputID": 3663702,
        "toolConfigID": 2094,
        "taskID": 1881855,
        "status": "Completed",
        "outputID": 3673260,
        "isUsed": true
      },
      "Result": {
        "result": "3900.6",
        "isUsed": true
      }
    }
  },
}